I've had this on the front cylinder. It was the terminals on the front coil, they get more affected by the weather than the rear which is all warm and snug under th seat/tank.
Just pull the two spade connectors of the spades on the front coil, then get a file or a knife and scrape them till they are bright again. This cured mine (about a year back now and 20,000 miles ago)and was really down to riding every day in all weathers, especially when I removed the 2 rubber strips that hang down the front of the frame down tube.
My symptoms were exactly as you describe, sudden loss of power and loss of spark on front cylinder, then fine next morning or after it all cooled down.
If I could be bothered I'd swap the two coils around and give the front a rest and expose the rear instead to some real weather.
3 Africa Twins/280,000 miles. If it's happened to one of mine, it's gonna happen to one of yours.....eventually.
1 Varadero/17,000 miles ridden (of 40,000 miles on the bike), it's all still new to me!
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