Dassie
When measuring the valve clearances, anything in the "min-max" range is acceptable, so if they are already within these tolerances, don't touch them.
I've never done the clearances on mine, but by all accounts it can be a bit of a bitch. Do a forum search and see what you come up with.
The reason the engine must be cold (letting it cool down overnight is recommended) is that obviously metal expands, and this will affect any measurement you take. All quoted clearances will be from a cold engine.
If you are gonna do it, my only other tip is to remove all the spark plugs, as this will enable you to turn the engine over MUCH easier (by putting it on the centre stand, putting it in gear, and turning the rear wheel)
Bob